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Marker DXS9898
Primer
PrimerF: |
5' - |
CGA GCA CAC CTA CAA AAG CT |
- 3' |
PrimerR: |
5' - |
TCG ATT AGG TTC AGT TCC CA |
- 3' |
Typical structure10- 15 | 194, 198, 202, 206, 210, 214 | PF20-N16-(TATC)2-(ATC)-(TATC)8-13-N95-PR20 | 8.3 | 189 | PF20-N16-(TATC)2-(ATC)-(TATC)-(ATC)-(TATC)5-N95-PR20 |
K562 (BRL) | 12 | K562 (Promega) | 12 | NA3657 | 13 | NA9947A | 12, 15 | NA9948 | 14 |
Population dataThe values of the evaluation parameters presented in the following table are calculated live utilizing the population data presented in the corresponding reference. For this reason it may happen that the numbers differ from the figures given in the reference. Click here to view the equations our calculations are based on.1 | Belo Horizonte, Brazil | Genetic... | 0.7576 | 0.7887 | 0.5883 | 0.7575 | 0.7576 | 0.6290 | 0.9243 | 0.7887 | 2 | Germany | Hering ... | 0.7321 | 0.7701 | 0.5484 | 0.7309 | 0.7321 | 0.5976 | 0.9091 | 0.7701 | 3 | Germany (East) | Hering ... | 0.7310 | 0.7693 | 0.5476 | 0.7310 | 0.7310 | 0.5963 | 0.9085 | 0.7693 | 4 | Germany (North East) | Poetsch... | 0.7213 | 0.7610 | 0.5364 | 0.7225 | 0.7213 | 0.5848 | 0.9032 | 0.7610 | 5 | Korea | Shin SH... | 0.5822 | 0.6334 | 0.3929 | 0.5834 | 0.5822 | 0.4355 | 0.8144 | 0.6334 | 6 | Latvia | Poetsch... | 0.7165 | 0.7572 | 0.5301 | 0.7165 | 0.7165 | 0.5796 | 0.9004 | 0.7572 | 7 | Portugal (North) | Pereira... | 0.7337 | 0.7713 | 0.5518 | 0.7337 | 0.7337 | 0.5995 | 0.9101 | 0.7713 | 8 | Rio de Janeiro, Brazil | Genetic... | 0.7696 | 0.7996 | 0.6028 | 0.7696 | 0.7696 | 0.6434 | 0.9298 | 0.7996 | 9 | Spain (Valencia) | Aler M,... | 0.7319 | 0.7695 | 0.5501 | 0.7318 | 0.7319 | 0.5976 | 0.9093 | 0.7695 | 10 | São Paulo, Brazil | Genetic... | 0.7458 | 0.7778 | 0.5711 | 0.7430 | 0.7458 | 0.6147 | 0.9186 | 0.7778 | 11 | Vitória, Brazil | Genetic... | 0.7723 | 0.8013 | 0.6081 | 0.7722 | 0.7723 | 0.6472 | 0.9316 | 0.8013 |
1 |
Belo Horizonte, Brazil |
admixed |
Genetic... |
244 |
0.0085 |
0.1726 |
|
0.0454 |
0.1871 |
0.3115 |
0.2125 |
0.0055 |
0.0453 |
0.0115 |
2 |
Germany |
Caucasian (European) |
Hering ... |
245 females |
|
0.2690 |
|
0.0080 |
0.2200 |
0.2860 |
0.1570 |
|
0.0510 |
0.0080 |
3 |
Germany (East) |
Caucasian (European) |
Hering ... |
876 |
|
0.2590 |
|
0.0070 |
0.2190 |
0.2930 |
0.1640 |
|
0.0530 |
0.0050 |
4 |
Germany (North East) |
Caucasian (European) |
Poetsch... |
205 |
|
0.2130 |
0.0030 |
0.0070 |
0.2100 |
0.3310 |
0.1970 |
|
0.0330 |
0.0070 |
5 |
Korea |
Asian (Korean) |
Shin SH... |
401 |
|
0.0380 |
|
0.0030 |
0.0590 |
0.5270 |
0.2790 |
|
0.0760 |
0.0190 |
6 |
Latvia |
Caucasian (European) |
Poetsch... |
152 |
|
0.2838 |
|
0.0135 |
0.2162 |
0.3108 |
0.1284 |
|
0.0473 |
|
7 |
Portugal (North) |
all |
Pereira... |
347 males |
|
0.2651 |
|
0.0115 |
0.2248 |
0.2853 |
0.1527 |
|
0.0548 |
0.0058 |
8 |
Rio de Janeiro, Brazil |
admixed |
Genetic... |
261 |
0.0025 |
0.1798 |
|
0.0394 |
0.1970 |
0.2611 |
0.2315 |
0.0074 |
0.0764 |
0.0049 |
9 |
Spain (Valencia) |
all |
Aler M,... |
145 females |
|
0.2966 |
|
0.0103 |
0.1552 |
0.2724 |
0.2034 |
|
0.0517 |
0.0103 |
10 |
São Paulo, Brazil |
admixed |
Genetic... |
250 |
0.0024 |
0.1305 |
|
0.0266 |
0.1908 |
0.3430 |
0.2077 |
|
0.0845 |
0.0121 |
11 |
Vitória, Brazil |
admixed |
Genetic... |
245 |
0.0049 |
0.2049 |
0.0025 |
0.0346 |
0.1852 |
0.2790 |
0.1975 |
0.0074 |
0.0617 |
0.0222 |
n* - If no information on the sex of the studied individuals is indicated, both sexes were examined.
References
- Aler A, Sanchez-Diz P, Gomes I, Gisbert M, Carracedo A, Amorim A, Gusmao L (2007) Genetic data of 1...
- Asamura H, Sakai H, Ota M, Fukushima H (2006) Japanese population data for eight X-STR loci using t...
- Catanesi CI, Martina PF, Giovambattista G, Zukas P, Vidal-Rioja L (2007) Geographic structure in gr...
- Edelmann J, Hering, S, Michael, M, Lessig, R, Deichsel, D, Meier-Sundhausen, G, Roewer, L, Plate, I...
- Gomes I, Alves C, Maxzud K, Pereira R, Prata MJ, Sanchez-Diz P, Carracedo A, Amorim A, Gusmao L (20...
- Gomes I, Prinz M, Pereira R, Meyers C, Mikulasovich RS, Amorim A, Carracedo A, Gusmao L (2007) Gene...
- Hering S, Kuhlisch E, Szibor R (2001) Development of the X-linked tetrameric microsatellite marker ...
- Lee HY, Park MJ, Jeong CK, Lee SY, Yoo JE, Chung U, Choi JH, Kim CY, Shin KJ (2004) Genetic charact...
- Pereira R, Gomes I, Amorim A, Gusmao L (2007) Genetic diversity of 10 X chromosome STRs in northern...
- Pico A, Castillo A, Vargas C, Amorim A, Gusmao L (2008) Genetic profile characterization and segreg...
- Poetsch M, El-Mostaqim D, Tschentscher F, Browne E, Timmann C, Horstmann R, von Wurmb-Schwark N (20...
- Poetsch M, Petersmann H, Repenning A, Lignitz E (2005) Development of two pentaplex systems with X-...
- Poetsch M, Sabule A, Petersmann H, Volksone V, Lignitz E (2006) Population data of 10 X-chromosomal...
- Rodrigues EMR, Leite FPDN, Hutz MH, Palha TDBF, dos Santos AKCR, dos Santos SEB (2008) A multiplex ...
- Schmidt D, Hummel S, Herrmann B (2003) Brief communication: Multiplex X/Y-PCR improves sex identifi...
- Shin SH, Yu JS, Park SW, Min GS, Chung KW (2005) Genetic analysis of 18 X-linked short tandem repea...
- Son JY, Lee YS, Choung CM, Lee SD (2002) Polymorphism of nine X chromosomal STR loci in Koreans. In...
- Szibor R (2007) X-chromosomal markers: past, present and future. Forensic Sci Int Genet 1:93-99
- Szibor R, Edelmann J, Hering S, Plate I, Wittig H, Roewer L, Wiegand P, Cali F, Romano V, Michael M...
- Szibor R, Hering S, Kuhlisch E, Plate I, Demberger S, Krawczak M, Edelmann J (2005) Haplotyping of ...
- Szibor R, Krawczak M, Hering S, Edelmann J, Kuhlisch E, Krause D (2003) Use of X-linked markers for...
- Zarrabeitia MT, Alonso A, Martin J, Gonzalez-Gay MA, Martin-Escudero JC, de Pancorbo MM, Sanz P, Ru...
- Lee KL, Han MS, Jo BH, Park SW, Heo KB, Chung KW (2008) Development of two hexaplex systems with X-...
- Peloso G, Grignani P, Previdere C (2004) Allele distribution of five X-chromosome STR loci in an It...
NoteNo data.
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News
Based on the review of december 2018, it has been decided in cooperation with the X working group to remove the PI calculation from this website.
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