ChrX-STR.org 2.0
Database and information hub for forensic X-chromosomal markers



Marker DXS9895

Create date: Jun 25, 2009 12:18:11 PM
Last update: Jun 25, 2009 12:23:59 PM
Cytogenetic localisation: p 22.32
Physical localisation NCBI 36: 7.387
Genetic localisation deCODE: 14.40
Rutgers Map v.2: 17.09
Reference: Edelmann J, Hering, S, Michael, M, Lessig, R, Deichsel, D, Meier-Sundhausen, G,...

Primer

PrimerF: 5' - TTGGGTGGGGACACAGAG - 3'
PrimerR: 5' - CCTGGCTCAAGGAATTACAA - 3'

Typical structure

AllelebpsSequence composition
11-18135-163PF-N12-(AGAT)9-A-(AGAT)3-N40-PR, PF-N12-(AGAT)10-A-(AGAT)3-N40-PR, PF-N12-(AGAT)11-A-(AGAT)3-N40-PR, PF-N12-(AGAT)12-A-(AGAT)3-N40-PR, PF-N12-(AGAT)3-AT-(AGAT)9-A-(AGAT)3-N40-PR, PF-N12-(AGAT)13-A-(AGAT)3-N40-PR 9, PF-N12-(AGAT)3-AT-(AGAT)10-A (AGAT)3-N40-PR, PF-N12-(AGAT)14-A-(AGAT)3-N40-PR 5, PF-N12-(AGAT)3-AT-(AGAT)11-A-(AGAT)3-N40-PR
Comment: PF: sequence of primer PF (18 bp), PR: complementary sequence of primer PR (20 bp), N12: CCAAACCATATC, N40: AGAATGAATATATAGACACAGGTAAATTTTCATTTTTTAT (differences to GDB sequence are underlined).
References: Edelmann J, Deichsel D, Hering S, Plate I, Szibor R (2002) Sequence variation a...

Cell line DNAAllele
K562 (BRL)16
K562 (Promega)16
NA365715
NA9947A13, 17
NA994813
References: Szibor R, Edelmann J, Zarrabeitia MT, Riancho JA (2003) Sequence structure and ...

Population data

The values of the evaluation parameters presented in the following table are calculated live utilizing the population data presented in the corresponding reference. For this reason it may happen that the numbers differ from the figures given in the reference. Click here to view the equations our calculations are based on.
IDPopulationReferencePICHETMEC KrügerMEC KishidaMEC DesmaraisMEC Desmarais duoPD femalePD male
1China (Wuhan)Huang D...0.68830.73610.49120.68830.68830.54700.88250.7361
2GermanyEdelman...0.69400.74040.49920.69400.69400.55370.88620.7404
3KoreaShin SH...0.70560.75020.51200.70560.70560.56630.89310.7502
4TaiwanChen MY...0.67300.72140.47720.67420.67300.53020.87400.7214
ID Population Ethnic specification Reference n* 11 12 13 14 15 15.2 16 16.2 17 17.2 18
1 China (Wuhan) Asian (Chinese Han) Huang D... 292 0.0020 0.3060 0.3100 0.2450 0.1180 0.0130 0.0060
2 Germany Caucasian (European) Edelman... 566 0.0010 0.3060 0.3040 0.2440 0.0010 0.1170 0.0100 0.0150 0.0020
3 Korea Asian (Korean) Shin SH... 401 0.0040 0.2880 0.2930 0.2340 0.1610 0.0190 0.0010
4 Taiwan all Chen MY... 413 0.0020 0.0020 0.2860 0.3800 0.1970 0.1150 0.0190
n* - If no information on the sex of the studied individuals is indicated, both sexes were examined.

References

Note

No data.

News

Based on the review of december 2018, it has been decided in cooperation with the X working group to remove the PI calculation from this website.