ChrX-STR.org 2.0
Database and information hub for forensic X-chromosomal markers



Marker DXS6800

Create date: Jun 25, 2009 12:18:13 PM
Last update: Jul 4, 2012 11:23:20 AM
Cytogenetic localisation: q 13.30
Physical localisation NCBI 36: 78.567
Genetic localisation deCODE: 86.84
Rutgers Map v.2: 97.49
Reference: Edelmann J, Hering, S, Michael, M, Lessig, R, Deichsel, D, Meier-Sundhausen, G,...

Primer

PrimerF: 5' - GTGGGACCTTGTGATTGTGT - 3'
PrimerR: 5' - CTGGCTGACACTTAGGGAAA - 3'

Typical structure

AllelebpsSequence composition
16194PF-N36-(TAGA)5-CA-(GATA)1-GAT-(GATA)4-GG-(TAGA)3-TC-(GATA)3-N45-PR
17198PF-N36-(TAGA)7-CA-(GATA)1-GAT-(GATA)3-GG-(TAGA)3-TC-(GATA)3-N45-PR
18202PF-N36-(TAGA)7-CA-(GATA)1-GAT-(GATA)4-GG-(TAGA)3-TC-(GATA)3-N45-PR
19206PF-N36-(TAGA)8-CA-(GATA)1-GAT-(GATA)4-GG-(TAGA)3-TC-(GATA)3-N45-PR
20210PF-N36-(TAGA)9-CA-(GATA)1-GAT-(GATA)4-GG-(TAGA)3-TC-(GATA)3-N45-PR
21214PF-N36-(TAGA)10-CA-(GATA)1-GAT-(GATA)4-GG-(TAGA)3-TC-(GATA)3-N45-PR
22218PF-N36-(TAGA)11-CA-(GATA)1-GAT-(GATA)4-GG-(TAGA)3-TC-(GATA)3-N45-PR
Comment: PF: sequence of primer PF (20 bp), PR: complementary sequence of primer PR (20 bp), N36: GAGTTTAATACTCCTTAATAAATTCTCCTTTATATC, N45: TCAGGGGAACCAGCCCCCAATATTTCAACGTAGGTTCTTTTCTAT.
References: Edelmann J, Deichsel D, Hering S, Plate I, Szibor R (2002) Sequence variation a...

Cell line DNAAllele
K562 (BRL)21
K562 (Promega)21
NA365721
NA9947A18, 19
NA994819
References: Szibor R, Edelmann J, Hering S, Plate I, Wittig H, Roewer L, Wiegand P, Cali F,...

Population data

The values of the evaluation parameters presented in the following table are calculated live utilizing the population data presented in the corresponding reference. For this reason it may happen that the numbers differ from the figures given in the reference. Click here to view the equations our calculations are based on.
IDPopulationReferencePICHETMEC KrügerMEC KishidaMEC DesmaraisMEC Desmarais duoPD femalePD male
1AustriaWiegand...0.68910.73220.50960.69620.68910.54970.88520.7322
2GermanyEdelman...0.69040.73140.50870.69040.69040.55190.88680.7314
3GermanyFracass...0.66100.70870.47210.66100.66100.51940.86750.7087
4Germany (South)Wiegand...0.66130.70430.47570.66130.66130.51910.86950.7043
5KoreaShin SH...0.25130.26480.13840.24910.25130.14880.44600.2648
ID Population Ethnic specification Reference n* 15 16 17 18 19 20 21 22 23
1 Austria Caucasian (European) Wiegand... 270 females 0.3530 0.0380 0.1320 0.3360 0.0190 0.1020 0.0260
2 Germany Caucasian (European) Edelman... 559 0.3680 0.0520 0.0820 0.3350 0.0460 0.0940 0.0230
3 Germany Area of Münster Fracass... 217 both 0.3750 0.0560 0.0560 0.3620 0.0170 0.1120 0.0220
4 Germany (South) Caucasian (European) Wiegand... 216 females 0.4400 0.0320 0.0970 0.2870 0.0280 0.0880 0.0280
5 Korea Asian (Korean) Shin SH... 401 0.0020 0.8520 0.0050 0.0820 0.0060 0.0500 0.0010
n* - If no information on the sex of the studied individuals is indicated, both sexes were examined.

References

Note

No data.

News

Based on the review of december 2018, it has been decided in cooperation with the X working group to remove the PI calculation from this website.