|
Marker HPRTB
Primer
PrimerF: |
5' - |
TCTCTATTTCCATCTCTGTCTCC |
- 3' |
![](/xdb/a4j/g/3_3_0.GAimages/spacer.gif)
PrimerR: |
5' - |
TCACCCCTGTCTATGGTCTCG |
- 3' |
Typical structure9-17 | 144-176 | PF N30 (TCTA)n N34 PR |
![](/xdb/a4j/g/3_3_0.GAimages/spacer.gif)
Comment: |
Typical Sequence composition, N= Nucleotid, Allele variants are known |
K562 (BRL) | 13 | K562 (Promega) | 13 | NA3657 | 13 | NA9947A | 14, 14 | NA9948 | 14 |
Population dataThe values of the evaluation parameters presented in the following table are calculated live utilizing the population data presented in the corresponding reference. For this reason it may happen that the numbers differ from the figures given in the reference. Click here to view the equations our calculations are based on.1 | Argentina (Buenos Aires) | Sala, A... | 0.7283 | 0.7654 | 0.5458 | 0.7259 | 0.7283 | 0.5938 | 0.9078 | 0.7654 | 2 | Brazil (Pernambuco) | Maurici... | 0.7233 | 0.7612 | 0.5434 | 0.7245 | 0.7233 | 0.5881 | 0.9051 | 0.7612 | 3 | China (Guangdong) | Genetic... | 0.6814 | 0.7234 | 0.4922 | 0.6814 | 0.6814 | 0.5397 | 0.8815 | 0.7234 | 4 | Chinese | Tabbada... | 0.6572 | 0.7084 | 0.4601 | 0.6572 | 0.6572 | 0.5138 | 0.8637 | 0.7084 | 5 | Germany | Becker ... | 0.6974 | 0.7389 | 0.5123 | 0.6970 | 0.6974 | 0.5590 | 0.8904 | 0.7389 | 6 | Germany | Becker ... | 0.6881 | 0.7322 | 0.4989 | 0.6876 | 0.6881 | 0.5481 | 0.8842 | 0.7322 | 7 | Germany | Becker ... | 0.6944 | 0.7367 | 0.5080 | 0.6940 | 0.6944 | 0.5555 | 0.8884 | 0.7367 | 8 | Germany | Edelman... | 0.7372 | 0.7717 | 0.5620 | 0.7372 | 0.7372 | 0.6047 | 0.9134 | 0.7717 | 9 | Germany (Baden-Württenberg) | Szibor ... | 0.7326 | 0.7680 | 0.5512 | 0.7279 | 0.7326 | 0.5992 | 0.9107 | 0.7680 | 10 | Germany (North East) | Poetsch... | 0.7008 | 0.7419 | 0.5158 | 0.7008 | 0.7008 | 0.5625 | 0.8923 | 0.7419 | 11 | Ghana | Becker ... | 0.7654 | 0.7946 | 0.5999 | 0.7653 | 0.7654 | 0.6387 | 0.9286 | 0.7946 | 12 | Hungary | Füredi,... | 0.7178 | 0.7551 | 0.5381 | 0.7178 | 0.7178 | 0.5821 | 0.9027 | 0.7551 | 13 | Hungary | Zalán A... | 0.7117 | 0.7511 | 0.5282 | 0.7106 | 0.7117 | 0.5751 | 0.8987 | 0.7511 | 14 | Italy (Tuscany) | Toni C,... | 0.6924 | 0.7340 | 0.5077 | 0.6924 | 0.6924 | 0.5534 | 0.8877 | 0.7340 | 15 | Japan (Fukuoka) | Becker ... | 0.6135 | 0.6674 | 0.4081 | 0.6008 | 0.6135 | 0.4685 | 0.8354 | 0.6674 | 16 | Japanese | Tabbada... | 0.6137 | 0.6601 | 0.4221 | 0.6138 | 0.6137 | 0.4668 | 0.8381 | 0.6601 | 17 | Korea | Shin KJ... | 0.6356 | 0.6905 | 0.4364 | 0.6368 | 0.6356 | 0.4906 | 0.8493 | 0.6905 | 18 | Korea | Shin SH... | 0.6353 | 0.6807 | 0.4439 | 0.6353 | 0.6353 | 0.4897 | 0.8526 | 0.6807 | 19 | Latvia | Poetsch... | 0.6949 | 0.7375 | 0.5073 | 0.6949 | 0.6949 | 0.5556 | 0.8885 | 0.7375 | 20 | Mexico (Jalisco) | Rangel-... | 0.7345 | 0.7706 | 0.5563 | 0.7346 | 0.7345 | 0.6011 | 0.9112 | 0.7706 | 21 | Philippine | Tabbada... | 0.6263 | 0.6692 | 0.4356 | 0.6264 | 0.6263 | 0.4793 | 0.8477 | 0.6692 | 22 | Poland | Pepinsk... | 0.6980 | 0.7392 | 0.5132 | 0.6980 | 0.6980 | 0.5595 | 0.8908 | 0.7392 | 23 | Spain (Basque country) | Zarrabe... | 0.6904 | 0.7347 | 0.5002 | 0.6904 | 0.6904 | 0.5503 | 0.8853 | 0.7347 | 24 | Spain (Cantabria) | Zarrabe... | 0.7062 | 0.7472 | 0.5185 | 0.7038 | 0.7062 | 0.5684 | 0.8951 | 0.7472 | 25 | Spain (Cantabria) | Zarrabe... | 0.7157 | 0.7560 | 0.5298 | 0.7157 | 0.7157 | 0.5787 | 0.9001 | 0.7560 | 26 | Spain (Valencia) | Aler M,... | 0.6803 | 0.7254 | 0.4892 | 0.6802 | 0.6803 | 0.5391 | 0.8795 | 0.7254 | 27 | Taiwan | Chen MY... | 0.6598 | 0.7095 | 0.4635 | 0.6598 | 0.6598 | 0.5164 | 0.8659 | 0.7095 | 28 | Thai | Tabbada... | 0.7064 | 0.7478 | 0.5200 | 0.7066 | 0.7064 | 0.5684 | 0.8950 | 0.7478 | 29 | United Kingdom | Pai, A.... | 0.7206 | 0.7585 | 0.5402 | 0.7217 | 0.7206 | 0.5849 | 0.9037 | 0.7585 | 30 | USA (Afro-Americans) | Edwards... | 0.7320 | 0.7688 | 0.5531 | 0.7320 | 0.7320 | 0.5984 | 0.9097 | 0.7688 | 31 | USA (Caucasian) | Edwards... | 0.7112 | 0.7509 | 0.5274 | 0.7112 | 0.7112 | 0.5741 | 0.8982 | 0.7509 | 32 | USA (Hispanics) | Edwards... | 0.6775 | 0.7246 | 0.4837 | 0.6775 | 0.6775 | 0.5358 | 0.8770 | 0.7246 |
1 |
Argentina (Buenos Aires) |
Caucasoids |
Sala, A... |
278 |
|
|
|
|
0.0320 |
0.1790 |
|
0.3160 |
|
0.2840 |
0.1370 |
0.0470 |
0.0030 |
|
|
|
2 |
Brazil (Pernambuco) |
all |
Maurici... |
254 |
|
|
|
0.0160 |
0.0200 |
0.1460 |
|
0.2950 |
|
0.3190 |
0.1650 |
0.0240 |
0.0160 |
|
|
|
3 |
China (Guangdong) |
Asian (Chinese Han) |
Genetic... |
272 both |
|
|
|
|
|
0.1000 |
|
0.2225 |
|
0.4175 |
0.2000 |
0.0525 |
0.0075 |
|
|
|
4 |
Chinese |
Asian |
Tabbada... |
90 |
|
|
|
|
|
0.0700 |
|
0.3300 |
|
0.3800 |
0.1800 |
0.0300 |
0.0100 |
|
|
|
5 |
Germany |
Caucasian (European) |
Becker ... |
278 females |
|
|
|
0.0054 |
0.0072 |
0.1299 |
0.0054 |
0.3537 |
|
0.3212 |
0.1155 |
0.0487 |
0.0126 |
|
|
|
6 |
Germany |
Caucasian (European) |
Becker ... |
439 males |
|
|
|
0.0091 |
0.0023 |
0.1366 |
0.0045 |
0.3530 |
|
0.3280 |
0.1252 |
0.0341 |
0.0068 |
|
|
|
7 |
Germany |
Caucasian (European) |
Becker ... |
717 |
|
|
|
0.0066 |
0.0055 |
0.1322 |
0.0051 |
0.3535 |
|
0.3235 |
0.1187 |
0.0438 |
0.0107 |
|
|
|
8 |
Germany |
Caucasian (European) |
Edelman... |
335 |
|
|
|
0.0100 |
0.0190 |
0.1160 |
|
0.2760 |
|
0.3220 |
0.1690 |
0.0760 |
0.0120 |
|
|
|
9 |
Germany (Baden-Württenberg) |
Caucasian (European) |
Szibor ... |
643 |
|
|
|
0.0050 |
0.0140 |
0.1310 |
|
0.2870 |
|
0.3220 |
0.1520 |
0.0730 |
0.0120 |
|
|
|
10 |
Germany (North East) |
Caucasian (European) |
Poetsch... |
205 |
|
|
|
0.0030 |
0.0070 |
0.1180 |
|
0.3410 |
|
0.3280 |
0.1110 |
0.0890 |
0.0030 |
|
|
|
11 |
Ghana |
all |
Becker ... |
59 males |
|
|
|
0.0508 |
|
0.1017 |
|
0.3051 |
|
0.2373 |
0.1695 |
0.1186 |
0.0169 |
|
|
|
12 |
Hungary |
all |
Füredi,... |
242 |
|
|
0.0050 |
0.0200 |
0.0100 |
0.1320 |
|
0.3530 |
|
0.2840 |
0.1370 |
0.0540 |
0.0050 |
|
|
|
13 |
Hungary |
all |
Zalán A... |
384 |
|
|
0.0040 |
0.0220 |
0.0050 |
0.1130 |
0.0020 |
0.3220 |
|
0.3240 |
0.1580 |
0.0440 |
0.0050 |
|
|
|
14 |
Italy (Tuscany) |
Caucasian |
Toni C,... |
160 |
|
|
|
|
0.0080 |
0.0170 |
|
0.1170 |
0.0040 |
0.3750 |
0.3080 |
0.1210 |
0.0420 |
0.0080 |
|
|
15 |
Japan (Fukuoka) |
Asian (Japanese) |
Becker ... |
93 males |
|
|
|
|
|
0.0645 |
|
0.3226 |
|
0.4624 |
0.0968 |
0.0323 |
0.0108 |
|
|
|
16 |
Japanese |
Asian |
Tabbada... |
95 males |
|
|
|
|
|
0.0316 |
|
0.2421 |
|
0.5053 |
0.1474 |
0.0526 |
0.0211 |
|
|
|
17 |
Korea |
Asian (Korean) |
Shin KJ... |
300 |
|
|
|
|
|
0.0360 |
|
0.3130 |
|
0.4160 |
0.1890 |
0.0360 |
0.0110 |
|
|
|
18 |
Korea |
Asian (Korean) |
Shin SH... |
401 |
|
|
|
|
0.0040 |
0.0510 |
|
0.2490 |
|
0.4780 |
0.1490 |
0.0630 |
0.0060 |
|
|
|
19 |
Latvia |
Caucasian (European) |
Poetsch... |
152 |
|
|
|
0.0068 |
0.0135 |
0.1486 |
|
0.3649 |
|
0.2973 |
0.1351 |
0.0135 |
0.0068 |
0.0135 |
|
|
20 |
Mexico (Jalisco) |
all |
Rangel-... |
173 |
|
|
0.0043 |
0.0043 |
0.0086 |
0.0730 |
|
0.2790 |
|
0.3047 |
0.2017 |
0.1116 |
0.0129 |
|
|
|
21 |
Philippine |
Asian |
Tabbada... |
115 |
|
|
|
|
|
0.0983 |
|
0.2139 |
|
0.5029 |
0.1445 |
0.0405 |
|
|
|
|
22 |
Poland |
all |
Pepinsk... |
240 |
|
|
|
0.0222 |
|
0.1111 |
|
0.3639 |
|
0.3056 |
0.1417 |
0.0444 |
0.0083 |
0.0028 |
|
|
23 |
Spain (Basque country) |
Caucasian (European) |
Zarrabe... |
147 |
|
|
|
0.0050 |
|
0.0140 |
|
0.1450 |
|
0.3180 |
0.3500 |
0.1400 |
0.0280 |
|
|
|
24 |
Spain (Cantabria) |
Caucasian (European) |
Zarrabe... |
244 |
|
|
|
0.0080 |
|
0.0080 |
|
0.1460 |
|
0.3360 |
0.3110 |
0.1430 |
0.0360 |
0.0060 |
0.0020 |
0.0020 |
25 |
Spain (Cantabria) |
Caucasian (European) |
Zarrabe... |
131 |
|
|
|
0.0150 |
|
0.0050 |
|
0.1720 |
|
0.3180 |
0.2930 |
0.1620 |
0.0300 |
0.0050 |
|
|
26 |
Spain (Valencia) |
all |
Aler M,... |
145 females |
|
|
|
|
|
|
|
0.1172 |
0.0103 |
0.3828 |
0.3000 |
0.1517 |
0.0345 |
0.0034 |
|
|
27 |
Taiwan |
all |
Chen MY... |
571 |
|
|
|
|
|
0.0736 |
|
0.2995 |
|
0.3993 |
0.1856 |
0.0385 |
0.0035 |
|
|
|
28 |
Thai |
Asian |
Tabbada... |
157 |
|
|
|
|
|
0.1263 |
|
0.2980 |
0.0051 |
0.3384 |
0.1768 |
0.0354 |
0.0202 |
|
|
|
29 |
United Kingdom |
all |
Pai, A.... |
364 |
|
|
|
0.0030 |
0.0230 |
0.1600 |
|
0.3380 |
|
0.2820 |
0.1370 |
0.0530 |
0.0050 |
|
|
|
30 |
USA (Afro-Americans) |
all |
Edwards... |
178 |
0.0040 |
|
|
0.0180 |
0.0150 |
0.0690 |
|
0.2570 |
|
0.3040 |
0.2460 |
0.0830 |
0.0040 |
|
|
|
31 |
USA (Caucasian) |
Caucasian |
Edwards... |
168 |
|
0.0020 |
|
0.0050 |
0.0100 |
0.1340 |
|
0.3430 |
|
0.2950 |
0.1560 |
0.0430 |
0.0120 |
|
|
|
32 |
USA (Hispanics) |
all |
Edwards... |
169 |
|
|
|
0.0050 |
|
0.0620 |
|
0.3000 |
|
0.3710 |
0.2000 |
0.0620 |
|
|
|
|
n* - If no information on the sex of the studied individuals is indicated, both sexes were examined.
References
- Aler A, Sanchez-Diz P, Gomes I, Gisbert M, Carracedo A, Amorim A, Gusmao L (2007) Genetic data of 1...
- Asamura H, Sakai H, Ota M, Fukushima H (2006) Japanese population data for eight X-STR loci using t...
- Bini C, Ceccardi S, Ferri G, Pelotti S, Alu M, Roncaglia E, Beduschi G, Caenazzo L, Ponzano E, Tasi...
- Caine LM, Pontes L, Abrantes D, Lima G, Pinheiro F (2007) Genetic data of 4 X-chromosomal short tan...
- Caine LM, Pontes L, Abrantes D, Lima G, Pinheiro F (2007) Genetic data of four X-chromosomal STRs i...
- Catanesi CI, Martina PF, Giovambattista G, Zukas P, Vidal-Rioja L (2007) Geographic structure in gr...
- Chen MY, Wu FC, Meng LM, Cheng SM, Chao CH, Pu CE (2002) Population data on the X chromosome short ...
- de Castro IAB, Rinzler CMC, Rumjanek FD (2000) Allele frequency distributions for twelve STR loci i...
- Edelmann J, Hering, S, Michael, M, Lessig, R, Deichsel, D, Meier-Sundhausen, G, Roewer, L, Plate, I...
- Fracasso T, Schurenkamp M, Brinkmann B, Hohoff C (2008) An X-STR meiosis study in Kurds and Germans...
- Gomes I, Alves C, Maxzud K, Pereira R, Prata MJ, Sanchez-Diz P, Carracedo A, Amorim A, Gusmao L (20...
- Gomes I, Prinz M, Pereira R, Meyers C, Mikulasovich RS, Amorim A, Carracedo A, Gusmao L (2007) Gene...
- Gu SZ, Li SB (2006) X-chromosome STRs analysis of Ewenke ethnic population. Forensic Science Intern...
- Hering S, Brundirs N, Kuhlisch E, Edelmann J, Plate I, Benecke M, Van PH, Michael M, Szibor R (2004...
- Hering S, Kuhlisch E, Szibor R (2001) Development of the X-linked tetrameric microsatellite marker ...
- Honda K, Tun Z, Matoba R (2001) DNA testing of Klinefelter's syndrome in a criminal case using XY c...
- Kang LL, Li SB (2006) X-chromosome STR polymorphism of Luoba Ethnic Group living in Tibet (SW China...
- Kashyap VK, Chattopadhyay P, Dutta R, Vasulu TS (2004) Genetic structure and affinity among eight e...
- King BL, Lichtenstein A, Berenson J, Kacinski BM (1994) A Polymerase Chain Reaction-Based Microsate...
- Lee HY, Park MJ, Jeong CK, Lee SY, Yoo JE, Chung U, Choi JH, Kim CY, Shin KJ (2004) Genetic charact...
- Liu QB, Li SB (2006) Patterns of genetic polymorphism at the 10 X-chromosome STR loci in Mongol pop...
- Mauricio-da-Silva L, Silva RS, Dellalibera E, Donadi EA (2000) Population genetics of HPRTB, F13B, ...
- Mertens G, Gielis M, Mommers N, Mularoni A, Lamartine J, Heylen H, Muylle L, Vandenberghe A (1999) ...
- Mixich F, Ioana M, Mixich VA (2004) Paternity analysis in special fatherless cases without direct t...
- Panneerchelvam S, Vanaja N, Baskar D, Sivapriya V, Damodaran C (2001) Distribution of alleles of 12...
- Pereira R, Gomes I, Amorim A, Gusmao L (2007) Genetic diversity of 10 X chromosome STRs in northern...
- Pico A, Castillo A, Vargas C, Amorim A, Gusmao L (2008) Genetic profile characterization and segreg...
- Poetsch M, El-Mostaqim D, Tschentscher F, Browne E, Timmann C, Horstmann R, von Wurmb-Schwark N (20...
- Poetsch M, Petersmann H, Repenning A, Lignitz E (2005) Development of two pentaplex systems with X-...
- Poetsch M, Sabule A, Petersmann H, Volksone V, Lignitz E (2006) Population data of 10 X-chromosomal...
- Rangel-Villalobos H, Rivas F, Sandoval L, Ibarra B, Garcia-Carvajal ZY, Cantu JM, Figuera LE (2000)...
- Rangel-Villalobos H, Rivas F, Torres-Rodriguez M, Jaloma-Cruz AR, Gallegos-Arreola MP, Lopez-Satow ...
- Robino C, Giolitti A, Gino S, Torre C (2006) Development of two multiplex PCR systems for the analy...
- Rodrigues EMR, Leite FPDN, Hutz MH, Palha TDBF, dos Santos AKCR, dos Santos SEB (2008) A multiplex ...
- Sala A, Penacino G, Carnese R, Corach D (1999) Reference database of hypervariable genetic markers ...
- Sala A, Penacino G, Corach D (1998) Comparison of allele frequencies of eight STR loci from Argenti...
- Shin KJ, Kwon BK, Lee SS, Yoo JE, Park MJ, Chung U, Lee HY, Han GR, Choi JH, Kim CY (2004) Five hig...
- Shin SH, Yu JS, Park SW, Min GS, Chung KW (2005) Genetic analysis of 18 X-linked short tandem repea...
- Szibor R (2007) X-chromosomal markers: past, present and future. Forensic Sci Int Genet 1:93-99
- Szibor R, Edelmann J, Hering S, Plate I, Wittig H, Roewer L, Wiegand P, Cali F, Romano V, Michael M...
- Szibor R, Krawczak M, Hering S, Edelmann J, Kuhlisch E, Krause D (2003) Use of X-linked markers for...
- Tabbada KA, De Ungria MC, Faustino LP, Athanasiadou D, Stradmann-Bellinghausen B, Schneider PM (200...
- Tang WM, To KY (2006) Four X-chromosomal STRs and their allele frequencies in a Chinese population....
- Tariq MA, Ullah O, Riazuddin SA, Riazuddin S (2008) Allele frequency distribution of 13 X-chromosom...
- Toni C, Presciuttini S, Spinetti I, Domenici R (2003) Population data of four X-chromosome markers ...
- Trivedi R, Chattopadhyay P, Kashyap VK (2002) A new improved method for extraction of DNA from teet...
- Tun Z, Honda K, Nakatome M, Nakamura M, Shimada S, Ogura Y, Kuroki H, Yamazaki M, Terada M, Matoba ...
- Turrina S, Atzei R, Filippini G, De Leo D (2007) Development and forensic validation of a new multi...
- Valle Y, Padilla-Gutierrez JR, Rodarte K, Quintero-Ramos A, Ortiz R, Hernandez-Zaragoza G, Rivas F ...
- Yu B, Zhang HB, Li SB (2005) X-chromosome STRs polymorphisms of Han ethnic group from Northwest Chi...
- Zalan A, Volgyi A, Brabetz W, Schleinitz D, Pamjav H (2008) Hungarian population data of eight X-li...
- Zalan A, Volgyi A, Jung M, Peterman O, Pamjav H (2007) Hungarian population data of four X-linked m...
- Zarrabeitia MT, Alonso A, Zarrabeitia A, Castro A, Fernandez I, de Pancorbo MM (2004) X-linked micr...
- Zarrabeitia MT, Amigo T, Sanudo C, Zarrabeitia A, Gonzalez-Lamuno D, Riancho JA (2002) A new pentap...
- Crouse CA, Schumm J (1995) Investigation of Species-Specificity Using 9 Pcr-Based Human Str Systems...
- Edelmann J, Lessig R, Hering S, Horn LC (2004) Loss of heterozygosity and microsatellite instabilit...
- Mertens G, Mommers N, Heylen H, Gielis M, Boutrand L, Muylle L, Vandenberghe A (2000) Frequency dat...
- Vandenberghe A, Furedi S, Boutrand L, Mertens G (2000) Structure of rare alleles of locus HPRTB in ...
NoteNo data.
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News
Based on the review of december 2018, it has been decided in cooperation with the X working group to remove the PI calculation from this website.
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