ChrX-STR.org 2.0
Database and information hub for forensic X-chromosomal markers



Marker DXS6809

Create date: Jun 25, 2009 12:18:13 PM
Last update: Sep 24, 2010 11:26:04 AM
Cytogenetic localisation: q 21.33
Physical localisation NCBI 36: 94.825
Rutgers Map v.2: 108.12
Reference: Edelmann J, Deichsel D, Plate I, Kaser M, Szibor R (2003) Validation of the X-c...

Primer

PrimerF: 5' - TGA ACC TTC CTA GCT CAGGA - 3'
PrimerR: 5' - GCA AAA TTG GAT TCT CCA GA - 3'

Typical structure

AllelebpsSequence composition
27,28,29235,239,243PF20-N37-(CTAT)7-(ATCT)3-N9-(TATC)3-(ATCT)3-N10-(ATCT)11-13 -N31-PR20
30247PF20-N37-(CTAT)8-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)11-N31-PR20
31251PF20-N37-(CTAT)9-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)11-N31-PR20
32255PF20-N37-(CTAT)8-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)13-N31-PR20
33259PF20-N37-(CTAT)9-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)13-N31-PR20
34263PF20-N37-(CTAT)9-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)14-N31-PR20
35267PF20-N37-(CTAT)9-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)15-N31-PR20
36271PF20-N37-(CTAT)9-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)16-N31-PR20
37275PF20-N37-(CTAT)9-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)17-N31-PR20
38279PF20-N37-(CTAT)10-(ATCT)3-N9-(TATC)3-(ATCT)5-N10-(ATCT)17-N31-PR20
Comment: (Allele 30 with three isoalleles), N= Nucleotide
References: Edelmann J, Deichsel D, Plate I, Kaser M, Szibor R (2003) Validation of the X-c...

Cell line DNAAllele
K562 (BRL)34
K562 (Promega)34
NA365729
NA9947A31, 34
NA994831
References: Edelmann J, Deichsel D, Plate I, Kaser M, Szibor R (2003) Validation of the X-c...
Szibor R, Edelmann J, Hering S, Plate I, Wittig H, Roewer L, Wiegand P, Cali F,...

Population data

The values of the evaluation parameters presented in the following table are calculated live utilizing the population data presented in the corresponding reference. For this reason it may happen that the numbers differ from the figures given in the reference. Click here to view the equations our calculations are based on.
IDPopulationReferencePICHETMEC KrügerMEC KishidaMEC DesmaraisMEC Desmarais duoPD femalePD male
1Belo Horizonte, BrazilGenetic...0.80800.82900.66450.80800.80800.69400.94970.8290
2GermanyEdelman...0.81520.83500.67630.81640.81520.70350.95300.8350
3GermanyEdelman...0.81000.82950.66890.80880.81000.69710.95140.8295
4GermanyEdelman...0.81490.83430.67470.81380.81490.70330.95320.8343
5KoreaLee HY,...0.78720.81230.63030.78610.78720.66620.93970.8123
6Portugal (North)Pereira...0.79760.82100.64750.79760.79760.68000.94460.8210
7Rio de Janeiro, BrazilGenetic...0.81700.83670.67740.81690.81700.70570.95370.8367
8Spain (Valencia)Aler M,...0.76490.79280.60190.76460.76490.63860.92910.7928
9São Paulo, BrazilGenetic...0.79400.81670.64450.79370.79400.67580.94380.8167
10Vitória, BrazilGenetic...0.81330.83260.67340.81330.81330.70090.95270.8326
ID Population Ethnic specification Reference n* 27 28 29 30 30.1 31 31.1 32 32.1 33 33.1 34 35 35.1 36 37 38 39 40
1 Belo Horizonte, Brazil admixed Genetic... 245 0.0057 0.0142 0.0508 0.0313 0.1274 0.1642 0.0057 0.2661 0.2154 0.0766 0.0227 0.0199
2 Germany Caucasian (European) Edelman... 306 females 0.0160 0.0380 0.0110 0.0510 0.1650 0.1520 0.2680 0.1760 0.0770 0.0380 0.0070 0.0020
3 Germany Caucasian (European) Edelman... 419 males 0.0240 0.0430 0.0260 0.0240 0.1170 0.1380 0.2910 0.2050 0.0760 0.0380 0.0100 0.0070
4 Germany Caucasian (European) Edelman... 725 0.0190 0.0400 0.0170 0.0400 0.1450 0.1460 0.2770 0.1880 0.0770 0.0380 0.0080 0.0040
5 Korea Asian (Korean) Lee HY,... 300 0.0070 0.0200 0.1800 0.1560 0.2930 0.1760 0.1040 0.0530 0.0040 0.0040 0.0020
6 Portugal (North) all Pereira... 347 males 0.0086 0.0202 0.0202 0.0490 0.2017 0.1758 0.2709 0.1585 0.0720 0.0202 0.0029
7 Rio de Janeiro, Brazil admixed Genetic... 261 0.0049 0.0320 0.0517 0.0025 0.1502 0.0049 0.1429 0.2586 0.0025 0.1970 0.0985 0.0025 0.0320 0.0123 0.0025 0.0049
8 Spain (Valencia) all Aler M,... 145 females 0.0034 0.0172 0.0379 0.2000 0.1310 0.3310 0.1828 0.0690 0.0241 0.0034
9 São Paulo, Brazil admixed Genetic... 250 0.0024 0.0072 0.0145 0.0531 0.1570 0.0048 0.1377 0.0024 0.3043 0.1932 0.0725 0.0362 0.0072 0.0072
10 Vitória, Brazil admixed Genetic... 245 0.0198 0.0321 0.0716 0.1506 0.0074 0.1259 0.2914 0.1605 0.1012 0.0370 0.0025
n* - If no information on the sex of the studied individuals is indicated, both sexes were examined.

References

Note

No data.

News

Based on the review of december 2018, it has been decided in cooperation with the X working group to remove the PI calculation from this website.